He G, GrandPre T, Wilson H, Zhang Y, Jonikas M, Wingreen N, Wang Q. Phase-separating pyrenoid proteins form complexes in the dilute phase. Commun Biol. 2023;6(1):19. PMCID: PMC9825591

Fei C, Wilson A, Mangan N, Wingreen N, Jonikas M. Modelling the pyrenoid-based CO-concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops. Nat Plants. 2022;8(5):583–595. PMCID: PMC9122830

Fauser F, Vilarrasa-Blasi J, Onishi M, Ramundo S, Patena W, Millican M, Osaki J, Philp C, Nemeth M, Salomé P, Li X, Wakao S, Kim R, Kaye Y, Grossman A, Niyogi K, Merchant S, Cutler S, Walter P, Dinneny J, Jonikas M, Jinkerson R. Systematic characterization of gene function in the photosynthetic alga Chlamydomonas reinhardtii. Nat Genet. 2022;54(5):705–714. PMCID: PMC9110296

Ramundo S, Asakura Y, Salomé P, Strenkert D, Boone M, Mackinder L, Takafuji K, Dinc E, Rahire M, Crèvecoeur M, Magneschi L, Schaad O, Hippler M, Jonikas M, Merchant S, Nakai M, Rochaix J-D, Walter P. Coexpressed subunits of dual genetic origin define a conserved supercomplex mediating essential protein import into chloroplasts. Proc Natl Acad Sci U S A. 2020;117(51):32739–32749. PMCID: PMC7768757

He S, Chou H-T, Matthies D, Wunder T, Meyer M, Atkinson N, Martinez-Sanchez A, Jeffrey P, Port S, Patena W, He G, Chen V, Hughson F, McCormick A, Mueller-Cajar O, Engel B, Yu Z, Jonikas M. The structural basis of Rubisco phase separation in the pyrenoid. Nat Plants. 2020;6(12):1480–1490. PMCID: PMC7736253

Meyer M, Itakura A, Patena W, Wang L, He S, Emrich-Mills T, Lau C, Yates G, Mackinder L, Jonikas M. Assembly of the algal CO-fixing organelle, the pyrenoid, is guided by a Rubisco-binding motif. Sci Adv. 2020;6(46). PMCID: PMC7673724

Wang L, Jonikas M. The pyrenoid. Curr Biol. 2020;30(10):R456-R458. PMID: 32428480

Hennacy J, Jonikas M. Prospects for Engineering Biophysical CO Concentrating Mechanisms into Land Plants to Enhance Yields. Annu Rev Plant Biol. 2020;71:461–485. PMCID: PMC7845915

Itakura A, Chan K, Atkinson N, Pallesen L, Wang L, Reeves G, Patena W, Caspari O, Roth R, Goodenough U, McCormick A, Griffiths H, Jonikas M. A Rubisco-binding protein is required for normal pyrenoid number and starch sheath morphology in . Proc Natl Acad Sci U S A. 2019;116(37):18445–18454. PMCID: PMC6744930

Li X, Patena W, Fauser F, Jinkerson R, Saroussi S, Meyer M, Ivanova N, Robertson J, Yue R, Zhang R, Vilarrasa-Blasi J, Wittkopp T, Ramundo S, Blum S, Goh A, Laudon M, Srikumar T, Lefebvre P, Grossman A, Jonikas M. A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis. Nat Genet. 2019;51(4):627–635. PMCID: PMC6636631

Mackinder L, Chen C, Leib R, Patena W, Blum S, Rodman M, Ramundo S, Adams C, Jonikas M. A Spatial Interactome Reveals the Protein Organization of the Algal CO-Concentrating Mechanism. Cell. 2017;171(1):133–147.e14. PMCID: PMC5616186

Rosenzweig E, Xu B, Cuellar L, Martinez-Sanchez A, Schaffer M, Strauss M, Cartwright H, Ronceray P, Plitzko J, Förster F, Wingreen N, Engel B, Mackinder L, Jonikas M. The Eukaryotic CO-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization. Cell. 2017;171(1):148–162.e19. PMCID: PMC5671343

Jonikas M, Collins S, Denic V, Oh E, Quan E, Schmid V, Weibezahn J, Schwappach B, Walter P, Weissman J, Schuldiner M. Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science. 2009;323(5922):1693–7. PMCID: PMC2877488

Armbruster U, Carrillo R, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry J, Kramer D, Jonikas M. Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat Commun. 2014;5:5439. PMCID: PMC4243252

Li X, Zhang R, Patena W, Gang S, Blum S, Ivanova N, Yue R, Robertson J, Lefebvre P, Fitz-Gibbon S, Grossman A, Jonikas M. An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii. Plant Cell. 2016;28(2):367–87. PMCID: PMC4790863

Mackinder L, Meyer M, Mettler-Altmann T, Chen V, Mitchell M, Caspari O, Rosenzweig E, Pallesen L, Reeves G, Itakura A, Roth R, Sommer F, Geimer S, Mühlhaus T, Schroda M, Goodenough U, Stitt M, Griffiths H, Jonikas M. A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle. Proc Natl Acad Sci U S A. 2016;113(21):5958–63. PMCID: PMC4889370