Yates J, Cristea I, Dong M-Q, Eyers C, LaBaer J, Li J, Nicholson J, Overall C, Palmblad M, Slavov N. Want to Publish in ? This Is What You Need to Know!. J Proteome Res. 2022;21(12):2837–2839. PMID: 36373910

Omenn G, Lane L, Overall C, Pineau C, Packer N, Cristea I, Lindskog C, Weintraub S, Orchard S, Roehrl M, Nice E, Liu S, Bandeira N, Chen Y-J, Guo T, Aebersold R, Moritz R, Deutsch E. The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. J Proteome Res. 2023;22(4):1024–1042. PMCID: PMC10081950

Taylor I, Murray-Nerger L, Greco T, Liu D, Cristea I, Bassler B. Protein Interaction Networks of Catalytically Active and Catalytically Inactive PqsE in Pseudomonas aeruginosa. mBio. 2022;13(5):e0155922. PMCID: PMC9600345

Kennedy M, Greco T, Song B, Cristea I. HTT-OMNI: A Web-based Platform for Huntingtin Interaction Exploration and Multi-omics Data Integration. Mol Cell Proteomics. 2022;21(10):100275. PMCID: PMC9540350

Cook K, Tsopurashvili E, Needham J, Thompson S, Cristea I. Restructured membrane contacts rewire organelles for human cytomegalovirus infection. Nat Commun. 2022;13(1):4720. PMCID: PMC9366835

Justice J, Cristea I. Nuclear antiviral innate responses at the intersection of DNA sensing and DNA repair. Trends Microbiol. 2022;30(11):1056–1071. PMCID: PMC9560981

Howard T, Lum K, Kennedy M, Cristea I. The Nuclear DNA Sensor IFI16 Indiscriminately Binds to and Diminishes Accessibility of the HSV-1 Genome to Suppress Infection. mSystems. 2022;7(3):e0019822. PMCID: PMC9239196

Serrero M, Girault V, Weigang S, Greco T, Ramos-Nascimento A, Anderson F, Piras A, Martinez A, Hertzog J, Binz A, Pohlmann A, Prank U, Rehwinkel J, Bauerfeind R, Cristea I, Pichlmair A, Kochs G, Sodeik B. The interferon-inducible GTPase MxB promotes capsid disassembly and genome release of herpesviruses. Elife. 2022;11. PMCID: PMC9150894

Kennedy M, Tyl M, Betsinger C, Federspiel J, Sheng X, Arbuckle J, Kristie T, Cristea I. A TRUSTED targeted mass spectrometry assay for pan-herpesvirus protein detection. Cell Rep. 2022;39(6):110810. PMCID: PMC9245836

Robbe Z, Shi W, Wasson L, Scialdone A, Wilczewski C, Sheng X, Hepperla A, Akerberg B, Pu W, Cristea I, Davis I, Conlon F. CHD4 is recruited by GATA4 and NKX2-5 to repress noncardiac gene programs in the developing heart. Genes Dev. 2022;36(7-8):468–482. PMCID: PMC9067406

Greco T, Secker C, Ramos E, Federspiel J, Liu J-P, Perez A, Al-Ramahi I, Cantle J, Carroll J, Botas J, Zeitlin S, Wanker E, Cristea I. Dynamics of huntingtin protein interactions in the striatum identifies candidate modifiers of Huntington disease. Cell Syst. 2022;13(4):304–320.e5. PMCID: PMC9317655

Tyl M, Betsinger C, Cristea I. Virus-host protein interactions as footprints of human cytomegalovirus replication. Curr Opin Virol. 2022;52:135–147. PMCID: PMC8844139

Omenn G, Lane L, Overall C, Paik Y-K, Cristea I, Corrales F, Lindskog C, Weintraub S, Roehrl M, Liu S, Bandeira N, Srivastava S, Chen Y-J, Aebersold R, Moritz R, Deutsch E. Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project. J Proteome Res. 2021;20(12):5227–5240. PMCID: PMC9340669

Shi W, Sheng X, Dorr K, Hutton J, Emerson J, Davies H, Andrade T, Wasson L, Greco T, Hashimoto Y, Federspiel J, Robbe Z, Chen X, Arnold A, Cristea I, Conlon F. Cardiac proteomics reveals sex chromosome-dependent differences between males and females that arise prior to gonad formation. Dev Cell. 2021;56(21):3019–3034.e7. PMCID: PMC9290207

Christopher J, Stadler C, Martin C, Morgenstern M, Pan Y, Betsinger C, Rattray D, Mahdessian D, Gingras A-C, Warscheid B, Lehtiö J, Cristea I, Foster L, Emili A, Lilley K. Subcellular proteomics. Nat Rev Methods Primers. 2021;1. PMCID: PMC8451152

Betsinger C, Jankowski C, Hofstadter W, Federspiel J, Otter C, Beltran P, Cristea I. The human cytomegalovirus protein pUL13 targets mitochondrial cristae architecture to increase cellular respiration during infection. Proc Natl Acad Sci U S A. 2021;118(32). PMCID: PMC8364163

Howard T, Crow M, Greco T, Lum K, Li T, Cristea I. The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle. mSystems. 2021;6(3):e0039721. PMCID: PMC8269231

Murray-Nerger L, Cristea I. Lamin post-translational modifications: emerging toggles of nuclear organization and function. Trends Biochem Sci. 2021;46(10):832–847. PMCID: PMC8793286

Justice J, Kennedy M, Hutton J, Liu D, Song B, Phelan B, Cristea I. Systematic profiling of protein complex dynamics reveals DNA-PK phosphorylation of IFI16 en route to herpesvirus immunity. Sci Adv. 2021;7(25). PMCID: PMC8213230

Song B, Liu D, Greco T, Cristea I. Post-translational modification control of viral DNA sensors and innate immune signaling. Adv Virus Res. 2021;109:163–199. PMCID: PMC8489191

Sheng X, Cristea I. The antiviral sirtuin 3 bridges protein acetylation to mitochondrial integrity and metabolism during human cytomegalovirus infection. PLoS Pathog. 2021;17(4):e1009506. PMCID: PMC8078788

Esposito M, Fang C, Cook K, Park N, Wei Y, Spadazzi C, Bracha D, Gunaratna R, Laevsky G, DeCoste C, Slabodkin H, Brangwynne C, Cristea I, Kang Y. TGF-β-induced DACT1 biomolecular condensates repress Wnt signalling to promote bone metastasis. Nat Cell Biol. 2021;23(3):257–267. PMCID: PMC7970447

Lum K, Cristea I. Host Innate Immune Response and Viral Immune Evasion During Alphaherpesvirus Infection. Curr Issues Mol Biol. 2021;42:635–686. PMCID: PMC8301600

Murray-Nerger L, Justice J, Rekapalli P, Hutton J, Cristea I. Lamin B1 acetylation slows the G1 to S cell cycle transition through inhibition of DNA repair. Nucleic Acids Res. 2021;49(4):2044–2064. PMCID: PMC7913768

Tanneti N, Federspiel J, Cristea I, Enquist L. The axonal sorting activity of pseudorabies virus Us9 protein depends on the state of neuronal maturation. PLoS Pathog. 2020;16(12):e1008861. PMCID: PMC7794026

Howard T, Cristea I. Interrogating Host Antiviral Environments Driven by Nuclear DNA Sensing: A Multiomic Perspective. Biomolecules. 2020;10(12). PMCID: PMC7761228

Omenn G, Lane L, Overall C, Cristea I, Corrales F, Lindskog C, Paik Y-K, Van Eyk J, Liu S, Pennington S, Snyder M, Baker M, Bandeira N, Aebersold R, Moritz R, Deutsch E. Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. J Proteome Res. 2020;19(12):4735–4746. PMCID: PMC7718309

Adhikari S, Nice E, Deutsch E, Lane L, Omenn G, Pennington S, Paik Y-K, Overall C, Corrales F, Cristea I, Van Eyk J, Uhlén M, Lindskog C, Chan D, Bairoch A, Waddington J, Justice J, LaBaer J, Rodriguez H, He F, Kostrzewa M, Ping P, Gundry R, Stewart P, Srivastava S, Srivastava S, Nogueira F, Domont G, Vandenbrouck Y, P Y Lam M, Wennersten S, Vizcaino J, Wilkins M, Schwenk J, Lundberg E, Bandeira N, Marko-Varga G, Weintraub S, Pineau C, Kusebauch U, Moritz R, Ahn S, Palmblad M, Snyder M, Aebersold R, Baker M. A high-stringency blueprint of the human proteome. Nat Commun. 2020;11(1):5301. PMCID: PMC7568584

Federspiel J, Cook K, Kennedy M, Venkatesh S, Otter C, Hofstadter W, Beltran P, Cristea I. Mitochondria and Peroxisome Remodeling across Cytomegalovirus Infection Time Viewed through the Lens of Inter-ViSTA. Cell Rep. 2020;32(4):107943. PMCID: PMC8489195

Betsinger C, Cristea I. Mitochondrial Function, Metabolic Regulation, and Human Disease Viewed through the Prism of Sirtuin 4 (SIRT4) Functions. J Proteome Res. 2019;18(5):1929–1938. PMCID: PMC6889813

Kennedy M, Hofstadter W, Cristea I. TRANSPIRE: A Computational Pipeline to Elucidate Intracellular Protein Movements from Spatial Proteomics Data Sets. J Am Soc Mass Spectrom. 2020;31(7):1422–1439. PMCID: PMC7737664

Song B, Greco T, Lum K, Taber C, Cristea I. The DNA Sensor cGAS is Decorated by Acetylation and Phosphorylation Modifications in the Context of Immune Signaling. Mol Cell Proteomics. 2020;19(7):1193–1208. PMCID: PMC7338091

Kinoshita N, Hashimoto Y, Yasue N, Suzuki M, Cristea I, Ueno N. Mechanical Stress Regulates Epithelial Tissue Integrity and Stiffness through the FGFR/Erk2 Signaling Pathway during Embryogenesis. Cell Rep. 2020;30(11):3875–3888.e3. PMID: 32187556

Hartenian E, Gilbertson S, Federspiel J, Cristea I, Glaunsinger B. RNA decay during gammaherpesvirus infection reduces RNA polymerase II occupancy of host promoters but spares viral promoters. PLoS Pathog. 2020;16(2):e1008269. PMCID: PMC7032723

Greco T, Kennedy M, Cristea I. Proteomic Technologies for Deciphering Local and Global Protein Interactions. Trends Biochem Sci. 2020;45(5):454–455. PMID: 32035732

Hashimoto Y, Sheng X, Murray-Nerger L, Cristea I. Temporal dynamics of protein complex formation and dissociation during human cytomegalovirus infection. Nat Commun. 2020;11(1):806. PMCID: PMC7010728

Cook K, Moreno J, Beltran P, Cristea I. Peroxisome Plasticity at the Virus-Host Interface. Trends Microbiol. 2019;27(11):906–914. PMCID: PMC6857447

Lum K, Howard T, Pan C, Cristea I. Charge-Mediated Pyrin Oligomerization Nucleates Antiviral IFI16 Sensing of Herpesvirus DNA. mBio. 2019;10(4). PMCID: PMC6650555

Howard T, Song B, Cristea I. Workflows and considerations for investigating protein interactions of viral DNA sensors. Methods Enzymol. 2019;625:309–338. PMCID: PMC6889811

Federspiel J, Tandon P, Wilczewski C, Wasson L, Herring L, Venkatesh S, Cristea I, Conlon F. Conservation and divergence of protein pathways in the vertebrate heart. PLoS Biol. 2019;17(9):e3000437. PMCID: PMC6750614

Murray L, Combs A, Rekapalli P, Cristea I. Methods for characterizing protein acetylation during viral infection. Methods Enzymol. 2019;626:587–620. PMCID: PMC6889803

Hashimoto Y, Greco T, Cristea I. Contribution of Mass Spectrometry-Based Proteomics to Discoveries in Developmental Biology. Adv Exp Med Biol. 2019;1140:143–154. PMID: 31347046

Durán A, Greco T, Vollmer B, Cristea I, Grünewald K, Topf M. Protein interactions and consensus clustering analysis uncover insights into herpesvirus virion structure and function relationships. PLoS Biol. 2019;17(6):e3000316. PMCID: PMC6594648

Cristea I, Dorrestein P, Eisen J, Gilbert J, Huber J, Jansson J, Knight R, Pollard K, Raes J, Silver P, Webster N, Xu J. Early-Career Scientists Shaping the World. mSystems. 2019;4(3). PMCID: PMC6533378

Federspiel J, Cristea I. Considerations for Identifying Endogenous Protein Complexes from Tissue via Immunoaffinity Purification and Quantitative Mass Spectrometry. Methods Mol Biol. 2019;1977:115–143. PMID: 30980326

Federspiel J, Greco T, Lum K, Cristea I. Hdac4 Interactions in Huntington’s Disease Viewed Through the Prism of Multiomics. Mol Cell Proteomics. 2019;18(8 suppl 1):S92-S113. PMCID: PMC6692770

Esposito M, Mondal N, Greco T, Wei Y, Spadazzi C, Lin S-C, Zheng H, Cheung C, Magnani J, Lin S-H, Cristea I, Sackstein R, Kang Y. Bone vascular niche E-selectin induces mesenchymal-epithelial transition and Wnt activation in cancer cells to promote bone metastasis. Nat Cell Biol. 2019;21(5):627–639. PMCID: PMC6556210

Hashimoto Y, Kinoshita N, Greco T, Federspiel J, Beltran P, Ueno N, Cristea I. Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos. Cell Syst. 2019;8(3):226–241.e7. PMCID: PMC6453581

Cristea I, Lilley K. Editorial overview: Untangling proteome organization in space and time. Curr Opin Chem Biol. 2019;48:A1-A4. PMID: 30782346

Carabetta V, Greco T, Cristea I, Dubnau D. YfmK is an N-lysine acetyltransferase that directly acetylates the histone-like protein HBsu in . Proc Natl Acad Sci U S A. 2019;116(9):3752–3757. PMCID: PMC6397556