Thomas J. Silhavy Position Warner-Lambert Parke-Davis Professor of Molecular Biology Title MolBio Graduate School Advisor Website Silhavy Lab Office Phone 609-258-5899 Email [email protected] Assistant Jennifer Munko Office Thomas Laboratory, 310 Bio/Description Focus Protein targeting and signal transduction Research Membrane biogenesis and signal transduction All cells have subcellular compartments that are bound by lipid bilayers, and this three-dimensional organization is essential for life. If we consider lipid bilayers themselves as compartments, then Gram-negative bacteria, such as Escherichia coli, have four distinct subcellular locations: the cytoplasm, inner membrane (IM), periplasm, and outer membrane (OM). The noncytoplasmic compartments are collectively termed the cell envelope. We wish to understand cellular assembly, in particular, the process of OM biogenesis. The OM is an asymmetric lipid bilayer containing phospholipids in the inner leaflet and lipopolysaccharide (LPS) in the outer leaflet. Membrane spanning outer membrane proteins (OMPs) typically assume a beta-barrel conformation. All OM components are synthesized in the cytoplasm or the IM and therefore, OM biogenesis requires the transport of these molecules across the cell envelope for assembly at their final cellular location. Strikingly, these assembly processes occur outside the peptidoglycan cell wall in an environment that lacks an obvious energy source such as ATP. We use a combination of genetics, biochemistry, and bioinformatics to identify and characterize the cellular machinery required for these assembly reactions. We also study the signal transduction systems that monitor the integrity of the cell envelope and regulate the production of effector proteins that combat stress. The OM is an effective permeability barrier and because of this organelle Gram-negative bacteria are almost always more resistant to antibiotics than are Gram-positive bacteria. The essential OM assembly components we have identified represent attractive new drug targets. Indeed, these targets are accessible at the cell surface and thus not protected either by the OM barrier or by efflux pumps. But what is particularly intriguing is that even if they did not ki inhibitors would disrupt the OM barrier rendering strains more sensitive to existing antibiotics and thus could be especially effective in combination therapies. The more we learn about the OM barrier and how it is made, the more rational and sophisticated our approaches to find small molecule inhibitors. Biography Thomas J. Silhavy is the Warner-Lambert Parke-Davis Professor of Molecular Biology at Princeton University. Silhavy is a bacterial geneticist who has made fundamental contributions to several different research fields. He is best known for his work on protein secretion, membrane biogenesis, and signal transduction. Using Escherichia coli as a model system, his lab was the first to isolate signal sequence mutations, to identify a component of cellular protein secretion machinery, and an integral membrane component of the outer membrane assembly machinery, and to identify and characterize a two-component regulatory system. Current work in his lab is focused on the mechanisms of outer membrane biogenesis and the regulatory systems that sense and respond to envelope stress and trigger the developmental pathway that allows cells to survive starvation. He is the author of more than 275 research articles and three books. Professor Silhavy received his BS in Pharmacy (summa cum laude, 1971) from Ferris State College and his MS (1974) and PhD (1975) in Biological Chemistry from Harvard University. As a graduate student with Winfried Boos he helped characterize the role of periplasmic binding proteins in sugar transport. As a postdoctoral fellow with Jonathan Beckwith at Harvard Medical School he helped establish gene fusions as an experimental tool. He served as an Instructor of Microbiology at Harvard Medical School for two years, and he worked at the NCI Frederick Cancer Research Facility for five years where he was Director of the Laboratory of Genetics and Recombinant DNA. He came to Princeton in 1984 as a founding member of the Department of Molecular Biology. In recognition of his scientific accomplishments, Silhavy was awarded an honorary Doctor of Sciences degree from his alma mater, Ferris State College (1982), was elected Fellow of the American Academy of Microbiology (1994), the American Association for the Advancement of Science (2004), and the American Academy of Arts and Sciences (2005), and he is a member of the National Academy of Sciences (2005) and an associate member of EMBO (2008). In 1999 he received an NIH MERIT award, and he received the Novitski Prize for creativity from the Genetics Society of America in 2008, and the American Society for Microbiology (ASM) Lifetime Achievement Award in 2016. His commitment to teaching is evidenced by the President’s Award for Distinguished Teaching at Princeton (1993), the Graduate Microbiology Teaching award from the American Society for Microbiology (2002), and the Graduate Advising Award at Princeton (2003). Honors & Awards 2012 Appointed Editor-in-Chief of the Journal of Bacteriology, American Society for Microbiology Appointed Editor-in-Chief of the Journal of Bacteriology, American Society for Microbiology Education B.S., Pharmacy, Ferris State College A.M., Ph.D., Biochemistry, Harvard University Selected Publications 1.Combs A, Silhavy T. The sacrificial adaptor protein Skp functions to remove stalled substrates from the β-barrel assembly machine. Proc Natl Acad Sci U S A. 2022;119(1). PMCID: PMC8740687 1.Sun J, Rutherford S, Silhavy T, Huang K. Physical properties of the bacterial outer membrane. Nat Rev Microbiol. 2022;20(4):236–248. PMCID: PMC8934262 1.Benn G, Mikheyeva I, Inns P, Forster J, Ojkic N, Bortolini C, Ryadnov M, Kleanthous C, Silhavy T, Hoogenboom B. Phase separation in the outer membrane of . Proc Natl Acad Sci U S A. 2021;118(44). PMCID: PMC8612244 1.Guest R, Rutherford S, Silhavy T. Border Control: Regulating LPS Biogenesis. Trends Microbiol. 2021;29(4):334–345. PMCID: PMC7969359 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. J Virol. 2020;94(20). PMCID: PMC7527054 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. J Clin Microbiol. 2020;58(10). PMCID: PMC7512159 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Antimicrob Agents Chemother. 2020;64(10). PMCID: PMC7508623 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Infect Immun. 2020;88(10). PMCID: PMC7504940 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Clin Microbiol Rev. 2020;33(4). PMCID: PMC7405835 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Mol Cell Biol. 2020;40(19). PMCID: PMC7491949 View all publications 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. J Bacteriol. 2020;202(19). PMCID: PMC7484185 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Appl Environ Microbiol. 2020;86(18). PMCID: PMC7480379 1.Grimm J, Shi H, Wang W, Mitchell A, Wingreen N, Huang K, Silhavy T. The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in . Proc Natl Acad Sci U S A. 2020;117(43):26907–26914. PMCID: PMC7604412 1.Hart E, Silhavy T. Functions of the BamBCDE Lipoproteins Revealed by Bypass Mutations in BamA. J Bacteriol. 2020;202(21). PMCID: PMC7549358 1.Silhavy T. Acknowledgment of Reviewers. J Bacteriol. 2020;202(24). PMCID: PMC7685560 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. mBio. 2020;11(4). PMCID: PMC7396973 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Microbiol Resour Announc. 2020;9(32). PMCID: PMC7409866 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. mSystems. 2020;5(4). PMCID: PMC7398634 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. mSphere. 2020;5(4). PMCID: PMC7398635 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Microbiol Spectr. 2020;8(3). PMID: 32737963 1.Silhavy T. Time To Go. J Bacteriol. 2020;203(1). PMCID: PMC7723951 1.Silhavy T. 2020 Jack Kenney Award for Outstanding Service. J Bacteriol. 2020;203(1). PMCID: PMC7723960 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. Microbiol Mol Biol Rev. 2020;84(3). PMCID: PMC7405851 1.Hart E, Gupta M, Wühr M, Silhavy T. The gain-of-function allele bypasses the essential requirement for BamD in β-barrel outer membrane protein assembly. Proc Natl Acad Sci U S A. 2020;117(31):18737–18743. PMCID: PMC7414184 1.Guest R, Guerra D, Wissler M, Grimm J, Silhavy T. YejM Modulates Activity of the YciM/FtsH Protease Complex To Prevent Lethal Accumulation of Lipopolysaccharide. mBio. 2020;11(2). PMCID: PMC7157816 1.Schloss P, Junior M, Alvania R, Arias C, Baumler A, Casadevall A, Detweiler C, Drake H, Gilbert J, Imperiale M, Lovett S, Maloy S, McAdam A, Newton I, Sadowsky M, Sandri-Goldin R, Silhavy T, Tontonoz P, Young J-A, Cameron C, Cann I, Fuller O, Kozik A. The ASM Journals Committee Values the Contributions of Black Microbiologists. J Microbiol Biol Educ. 2020;21(2). PMCID: PMC7398665 1.Hart E, Mitchell A, Konovalova A, Grabowicz M, Sheng J, Han X, Rodriguez-Rivera F, Schwaid A, Malinverni J, Balibar C, Bodea S, Si Q, Wang H, Homsher M, Painter R, Ogawa A, Sutterlin H, Roemer T, Black T, Rothman D, Walker S, Silhavy T. A small-molecule inhibitor of BamA impervious to efflux and the outer membrane permeability barrier. Proc Natl Acad Sci U S A. 2019;116(43):21748–21757. PMCID: PMC6815139 1.Silhavy T. Current Issues in Scientific Publishing. J Bacteriol. 2019;. PMID: 31591274 1.Hart E, Gupta M, Wühr M, Silhavy T. The Synthetic Phenotype of Δ Δ Double Mutants Results from a Lethal Jamming of the Bam Complex by the Lipoprotein RcsF. mBio. 2019;10(3). PMCID: PMC6529638 1.Ricci D, Silhavy T. Outer Membrane Protein Insertion by the β-barrel Assembly Machine. EcoSal Plus. 2019;8(2). PMCID: PMC6419762 1.Hart E, O’Connell A, Tang K, Wzorek J, Grabowicz M, Kahne D, Silhavy T. Fine-Tuning of σ Activation Suppresses Multiple Assembly-Defective Mutations in Escherichia coli. J Bacteriol. 2019;201(11). PMCID: PMC6509652 1.Silhavy T, Mitchell A. Genetic Analysis of Protein Translocation. Protein J. 2019;38(3):217–228. PMCID: PMC6589372 1.Silhavy T. Olaf Schneewind, 1961-2019: Scientist, Mentor, Friend. J Bacteriol. 2019;. PMID: 31358607 1.Mitchell A, Silhavy T. Envelope stress responses: balancing damage repair and toxicity. Nat Rev Microbiol. 2019;17(7):417–428. PMCID: PMC6596312 1.Silhavy T. 2018 Jack Kenney Award for Outstanding Service. J Bacteriol. 2019;201(1). PMCID: PMC6287461 1.Silhavy T. State of the Journal. J Bacteriol. 2019;201(1). PMCID: PMC6287459 1.Silhavy T. Acknowledgment of Reviewers. J Bacteriol. 2019;201(24). PMCID: PMC6872202 1.Silhavy T. 2019 Jack Kenney Award for Outstanding Service. J Bacteriol. 2019;202(1). PMID: 31811086 1.May K, Silhavy T. Erratum for May and Silhavy, "The Escherichia coli Phospholipase PldA Regulates Outer Membrane Homeostasis via Lipid Signaling". mBio. 2018;9(3). PMCID: PMC5930300 1.May K, Silhavy T. The Phospholipase PldA Regulates Outer Membrane Homeostasis via Lipid Signaling. mBio. 2018;9(2). PMCID: PMC5874903 1.Lee J, Sutterlin H, Wzorek J, Mandler M, Hagan C, Grabowicz M, Tomasek D, May M, Hart E, Silhavy T, Kahne D. Substrate binding to BamD triggers a conformational change in BamA to control membrane insertion. Proc Natl Acad Sci U S A. 2018;115(10):2359–2364. PMCID: PMC5877925 1.Konovalova A, Grabowicz M, Balibar C, Malinverni J, Painter R, Riley D, Mann P, Wang H, Garlisi C, Sherborne B, Rigel N, Ricci D, Black T, Roemer T, Silhavy T, Walker S. Inhibitor of intramembrane protease RseP blocks the σ response causing lethal accumulation of unfolded outer membrane proteins. Proc Natl Acad Sci U S A. 2018;115(28):E6614-E6621. PMCID: PMC6048503 1.Silhavy T. 2017 Jack Kenney Award for Outstanding Service. J Bacteriol. 2018;200(1). PMCID: PMC5717154 1.Silhavy T. State of the Journal. J Bacteriol. 2018;200(1). PMCID: PMC5717162 1.Mitchell A, Srikumar T, Silhavy T. Cyclic Enterobacterial Common Antigen Maintains the Outer Membrane Permeability Barrier of Escherichia coli in a Manner Controlled by YhdP. mBio. 2018;9(4). PMCID: PMC6083912 1.Rowland E, Greco T, Snowden C, McCabe A, Silhavy T, Cristea I. Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes. mBio. 2017;8(5). PMCID: PMC5596343 1.Konovalova A, Kahne D, Silhavy T. Outer Membrane Biogenesis. Annu Rev Microbiol. 2017;71:539–556. PMCID: PMC5778897 1.McCabe A, Ricci D, Adetunji M, Silhavy T. Conformational Changes That Coordinate the Activity of BamA and BamD Allowing β-Barrel Assembly. J Bacteriol. 2017;199(20). PMCID: PMC5637172 Research Area Microbiology, Virology & Immunology