Graduate Publications

381 Publications

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Papenfort K, Silpe J, Schramma K, Cong J-P, Seyedsayamdost M, Bassler B. A Vibrio cholerae autoinducer-receptor pair that controls biofilm formation. Nat Chem Biol. 2017;13(5):551–557. PMCID: PMC5391282
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Pappireddi N, Martin L, Wühr M. A Review on Quantitative Multiplexed Proteomics. Chembiochem. 2019;20(10):1210–1224. PMCID: PMC6520187
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Pastino A, Greco T, Mathias R, Cristea I, Schwarzbauer J. Stimulatory effects of advanced glycation endproducts (AGEs) on fibronectin matrix assembly. Matrix Biol. 2017;59:39–53. PMCID: PMC5237628
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Pavlova N, Hui S, Ghergurovich J, Fan J, Intlekofer A, White R, Rabinowitz J, Thompson C, Zhang J. As Extracellular Glutamine Levels Decline, Asparagine Becomes an Essential Amino Acid. Cell Metab. 2018;27(2):428–438.e5. PMCID: PMC5803449
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Pelliccia J, Jindal G, Burdine R. Gdf3 is required for robust Nodal signaling during germ layer formation and left-right patterning. Elife. 2017;6. PMCID: PMC5745080
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Peng Y, Gavis E. The Drosophila hnRNP F/H homolog Glorund recruits dFMRP to inhibit nanos translation elongation. Nucleic Acids Res. 2022;50(12):7067–7083. PMCID: PMC9262583
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Perez L, Karagounis T, Hurley A, Bassler B, Semmelhack M. Highly Potent, Chemically Stable Quorum Sensing Agonists for . Chem Sci. 2014;5(1):151–155. PMCID: PMC3890260
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Pérez-Núñez I, Rozalén C, Palomeque J, Sangrador I, Dalmau M, Comerma L, Hernández-Prat A, Casadevall D, Menendez S, Liu D, Shen M, Berenguer J, Ruiz I, Peña R, Montañés J, Albà M, Bonnin S, Ponomarenko J, Gomis R, Cejalvo J, Servitja S, Marzese D, Morey L, Voorwerk L, Arribas J, Bermejo B, Kok M, Pusztai L, Kang Y, Albanell J, Celià-Terrassa T. LCOR mediates interferon-independent tumor immunogenicity and responsiveness to immune-checkpoint blockade in triple-negative breast cancer. Nat Cancer. 2022;3(3):355–370. PMCID: 5391692
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Pinto L, Koay S, Engelhard B, Yoon A, Deverett B, Thiberge S, Witten I, Tank D, Brody C. An Accumulation-of-Evidence Task Using Visual Pulses for Mice Navigating in Virtual Reality. Front Behav Neurosci. 2018;12:36. PMCID: PMC5845651
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Piochon C, Kloth A, Grasselli G, Titley H, Nakayama H, Hashimoto K, Wan V, Simmons D, Eissa T, Nakatani J, Cherskov A, Miyazaki T, Watanabe M, Takumi T, Kano M, Wang S, Hansel C. Cerebellar plasticity and motor learning deficits in a copy-number variation mouse model of autism. Nat Commun. 2014;5:5586. PMCID: PMC4243533

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Rabie E, Zhang S, Dunn C, Nelson C. Substratum stiffness signals through integrin-linked kinase and β1-integrin to regulate midbody proteins and abscission during EMT. Mol Biol Cell. 2021;32(18):1664–1676. PMCID: PMC8684726
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Rabie E, Zhang S, Kourouklis A, Kilinc N, Simi A, Radisky D, Tien J, Nelson C. Matrix degradation and cell proliferation are coupled to promote invasion and escape from an engineered human breast microtumor. Integr Biol (Camb). 2021;13(1):17–29. PMCID: PMC7856634
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Raitman I, Huang M, Williams S, Friedman B, Godula K, Schwarzbauer J. Heparin-fibronectin interactions in the development of extracellular matrix insolubility. Matrix Biol. 2018;67:107–122. PMCID: PMC5910196
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Rale M, Kadzik R, Petry S. Phase Transitioning the Centrosome into a Microtubule Nucleator. Biochemistry. 2018;57(1):30–37. PMCID: PMC6193265
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Ravindran P, Wilson M, Jena S, Toettcher J. Engineering combinatorial and dynamic decoders using synthetic immediate-early genes. Commun Biol. 2020;3(1):436. PMCID: PMC7426417
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Ravindran P, McFann S, Thornton R, Toettcher J. A synthetic gene circuit for imaging-free detection of signaling pulses. Cell Syst. 2022;13(2):131–142.e13. PMCID: PMC8857027
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Ren G, Esposito M, Kang Y. Bone metastasis and the metastatic niche. J Mol Med (Berl). 2015;93(11):1203–12. PMCID: PMC4636917
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Resnikoff H, Miller C, Schwarzbauer J. Implications of fibrotic extracellular matrix in diabetic retinopathy. Exp Biol Med (Maywood). 2022;247(13):1093–1102. PMCID: PMC9335512
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Robbe Z, Shi W, Wasson L, Scialdone A, Wilczewski C, Sheng X, Hepperla A, Akerberg B, Pu W, Cristea I, Davis I, Conlon F. CHD4 is recruited by GATA4 and NKX2-5 to repress noncardiac gene programs in the developing heart. Genes Dev. 2022;36(7-8):468–482. PMCID: PMC9067406
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Robinson J, Jaslove J, Murawski A, Fazen C, Brynildsen M. An integrated network analysis reveals that nitric oxide reductase prevents metabolic cycling of nitric oxide by Pseudomonas aeruginosa. Metab Eng. 2017;41:67–81. PMID: 28363762
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Ron-Harel N, Santos D, Ghergurovich J, Sage P, Reddy A, Lovitch S, Dephoure N, Satterstrom K, Sheffer M, Spinelli J, Gygi S, Rabinowitz J, Sharpe A, Haigis M. Mitochondrial Biogenesis and Proteome Remodeling Promote One-Carbon Metabolism for T Cell Activation. Cell Metab. 2016;24(1):104–17. PMCID: PMC5330619
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Rowland E, Greco T, Snowden C, McCabe A, Silhavy T, Cristea I. Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes. mBio. 2017;8(5). PMCID: PMC5596343
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Rowland E, Snowden C, Cristea I. Protein lipoylation: an evolutionarily conserved metabolic regulator of health and disease. Curr Opin Chem Biol. 2018;42:76–85. PMCID: PMC5965299
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Rowles D, Tsai Y-C, Greco T, Lin A, Li M, Yeh J, Cristea I. DNA methyltransferase DNMT3A associates with viral proteins and impacts HSV-1 infection. Proteomics. 2015;15(12):1968–82. PMCID: PMC4550099