Graduate Publications

381 Publications

2017

1.
Grant M, Patterson V, Grimes D, Burdine R. Modeling Syndromic Congenital Heart Defects in Zebrafish. Curr Top Dev Biol. 2017;124:1–40. PMID: 28335857
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Robinson J, Jaslove J, Murawski A, Fazen C, Brynildsen M. An integrated network analysis reveals that nitric oxide reductase prevents metabolic cycling of nitric oxide by Pseudomonas aeruginosa. Metab Eng. 2017;41:67–81. PMID: 28363762
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Giovannucci A, Badura A, Deverett B, Najafi F, Pereira T, Gao Z, Ozden I, Kloth A, Pnevmatikakis E, Paninski L, De Zeeuw C, Medina J, Wang S. Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning. Nat Neurosci. 2017;20(5):727–734. PMCID: PMC5704905
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Lomaev D, Mikhailova A, Erokhin M, Shaposhnikov A, Moresco J, Blokhina T, Wolle D, Aoki T, Ryabykh V, Yates J, Shidlovskii Y, Georgiev P, Schedl P, Chetverina D. The GAGA factor regulatory network: Identification of GAGA factor associated proteins. PLoS One. 2017;12(3):e0173602. PMCID: PMC5351981
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Deshpande G, Barr J, Gerlitz O, Lebedeva L, Shidlovskii Y ii, Schedl P. Cells on the move: Modulation of guidance cues during germ cell migration. Fly (Austin). 2017;11(3):200–207. PMCID: PMC5552272
1.
Shi C, Runnels A, Murphy C. Mating and male pheromone kill males through distinct mechanisms. Elife. 2017;6. PMCID: PMC5378475
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Papenfort K, Silpe J, Schramma K, Cong J-P, Seyedsayamdost M, Bassler B. A Vibrio cholerae autoinducer-receptor pair that controls biofilm formation. Nat Chem Biol. 2017;13(5):551–557. PMCID: PMC5391282
1.
Khodaparast S, Kim M, Silpe J, Stone H. Bubble-Driven Detachment of Bacteria from Confined Microgeometries. Environ Sci Technol. 2017;51(3):1340–1347. PMID: 28075119
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Miller C, Budoff G, Prenner J, Schwarzbauer J. Minireview: Fibronectin in retinal disease. Exp Biol Med (Maywood). 2017;242(1):1–7. PMCID: PMC5206986
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Doubrovinski K, Swan M, Polyakov O, Wieschaus E. Measurement of cortical elasticity in Drosophila melanogaster embryos using ferrofluids. Proc Natl Acad Sci U S A. 2017;114(5):1051–1056. PMCID: PMC5293093
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Lerit D, Shebelut C, Lawlor K, Rusan N, Gavis E, Schedl P, Deshpande G. Germ Cell-less Promotes Centrosome Segregation to Induce Germ Cell Formation. Cell Rep. 2017;18(4):831–839. PMCID: PMC5327791
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Goyal Y, Jindal G, Pelliccia J, Yamaya K, Yeung E, Futran A, Burdine R, Schüpbach T, Shvartsman S. Divergent effects of intrinsically active MEK variants on developmental Ras signaling. Nat Genet. 2017;49(3):465–469. PMCID: PMC5621734
1.
Paczkowski J, Mukherjee S, McCready A, Cong J-P, Aquino C, Kim H, Henke B, Smith C, Bassler B. Flavonoids Suppress Virulence through Allosteric Inhibition of Quorum-sensing Receptors. J Biol Chem. 2017;292(10):4064–4076. PMCID: PMC5354481
1.
Winer B, Huang T, Low B, Avery C, Pais M-A, Hrebikova G, Siu E, Chiriboga L, Wiles M, Ploss A. Recapitulation of treatment response patterns in a novel humanized mouse model for chronic hepatitis B virus infection. Virology. 2017;502:63–72. PMCID: PMC5414730
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Ding Q, Heller B, Capuccino J, Song B, Nimgaonkar I, Hrebikova G, Contreras J, Ploss A. Hepatitis E virus ORF3 is a functional ion channel required for release of infectious particles. Proc Natl Acad Sci U S A. 2017;114(5):1147–1152. PMCID: PMC5293053
1.
Bartlett T, Bratton B, Duvshani A, Miguel A, Sheng Y, Martin N, Nguyen J, Persat A, Desmarais S, VanNieuwenhze M, Huang K, Zhu J, Shaevitz J, Gitai Z. A Periplasmic Polymer Curves Vibrio cholerae and Promotes Pathogenesis. Cell. 2017;168(1-2):172–185.e15. PMCID: PMC5287421
1.
Pastino A, Greco T, Mathias R, Cristea I, Schwarzbauer J. Stimulatory effects of advanced glycation endproducts (AGEs) on fibronectin matrix assembly. Matrix Biol. 2017;59:39–53. PMCID: PMC5237628
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Aw W, Devenport D. Planar cell polarity: global inputs establishing cellular asymmetry. Curr Opin Cell Biol. 2017;44:110–116. PMCID: PMC5326696

2016

1.
Habrian C, Chandrasekhara A, Shahrvini B, Hua B, Lee J, Jesinghaus R, Barry R, Gitai Z, Kollman J, Baldwin E. Inhibition of Escherichia coli CTP Synthetase by NADH and Other Nicotinamides and Their Mutual Interactions with CTP and GTP. Biochemistry. 2016;55(39):5554–5565. PMCID: PMC5584805
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Geronimo C, Zakian V. Getting it done at the ends: Pif1 family DNA helicases and telomeres. DNA Repair (Amst). 2016;44:151–158. PMCID: PMC5441554
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Mahoney T, Ricci D, Silhavy T. Classifying β-Barrel Assembly Substrates by Manipulating Essential Bam Complex Members. J Bacteriol. 2016;198(14):1984–92. PMCID: PMC4936103
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Konovalova A, Schwalm J, Silhavy T. A Suppressor Mutation That Creates a Faster and More Robust σE Envelope Stress Response. J Bacteriol. 2016;198(17):2345–51. PMCID: PMC4984553
1.
Ron-Harel N, Santos D, Ghergurovich J, Sage P, Reddy A, Lovitch S, Dephoure N, Satterstrom K, Sheffer M, Spinelli J, Gygi S, Rabinowitz J, Sharpe A, Haigis M. Mitochondrial Biogenesis and Proteome Remodeling Promote One-Carbon Metabolism for T Cell Activation. Cell Metab. 2016;24(1):104–17. PMCID: PMC5330619