Graduate Publications

381 Publications

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Lalwani M, Zhao E, Wegner S, Avalos J. The Inducible Q System Enables Simultaneous Optogenetic Amplification and Inversion in for Bidirectional Control of Gene Expression. ACS Synth Biol. 2021;10(8):2060–2075. PMID: 34346207

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Pinto L, Koay S, Engelhard B, Yoon A, Deverett B, Thiberge S, Witten I, Tank D, Brody C. An Accumulation-of-Evidence Task Using Visual Pulses for Mice Navigating in Virtual Reality. Front Behav Neurosci. 2018;12:36. PMCID: PMC5845651
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Liszczak G, Diehl K, Dann G, Muir T. Acetylation blocks DNA damage-induced chromatin ADP-ribosylation. Nat Chem Biol. 2018;14(9):837–840. PMCID: PMC6505472
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LaRue K, Clemens J, Berman G, Murthy M. Acoustic duetting in Drosophila virilis relies on the integration of auditory and tactile signals. Elife. 2015;4. PMCID: PMC4456510
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Arey R, Stein G, Kaletsky R, Kauffman A, Murphy C. Activation of G Signaling Enhances Memory Consolidation and Slows Cognitive Decline. Neuron. 2018;98(3):562–574.e5. PMCID: PMC5934306
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Soltes G, Schwalm J, Ricci D, Silhavy T. The Activity of Escherichia coli Chaperone SurA Is Regulated by Conformational Changes Involving a Parvulin Domain. J Bacteriol. 2016;198(6):921–9. PMCID: PMC4772605
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Dai W, Li A, Yu N, Nguyen T, Leach R, Wühr M, Kleiner R. Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation. Nat Chem Biol. 2021;17(11):1178–1187. PMCID: PMC8551019
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Wang R, Gallant Étienne, Wilson M, Wu Y, Li A, Gitai Z, Seyedsayamdost M. Algal p-coumaric acid induces oxidative stress and siderophore biosynthesis in the bacterial symbiont Phaeobacter inhibens. Cell Chem Biol. 2022;29(4):670–679.e5. PMCID: PMC8866538
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Stein R, Smith J, Rose M. An Amphiphysin-Like Domain in Fus2p Is Required for Rvs161p Interaction and Cortical Localization. G3 (Bethesda). 2015;6(2):337–49. PMCID: PMC4751553
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Orman M, Henry T, DeCoste C, Brynildsen M. Analyzing Persister Physiology with Fluorescence-Activated Cell Sorting. Methods Mol Biol. 2016;1333:83–100. PMCID: PMC4908830
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Liu Y, Maya S, Ploss A. Animal Models of Hepatitis B Virus Infection-Success, Challenges, and Future Directions. Viruses. 2021;13(5). PMCID: PMC8146732
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Berggren K, Suzuki S, Ploss A. Animal Models Used in Hepatitis C Virus Research. Int J Mol Sci. 2020;21(11). PMCID: PMC7312079
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Hecht M, Zarzhitsky S, Karas C, Chari S. Are natural proteins special? Can we do that?. Curr Opin Struct Biol. 2018;48:124–132. PMID: 29306103
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Pavlova N, Hui S, Ghergurovich J, Fan J, Intlekofer A, White R, Rabinowitz J, Thompson C, Zhang J. As Extracellular Glutamine Levels Decline, Asparagine Becomes an Essential Amino Acid. Cell Metab. 2018;27(2):428–438.e5. PMCID: PMC5803449
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Paczkowski J, McCready A, Cong J-P, Li Z, Jeffrey P, Smith C, Henke B, Hughson F, Bassler B. An Autoinducer Analogue Reveals an Alternative Mode of Ligand Binding for the LasR Quorum-Sensing Receptor. ACS Chem Biol. 2019;14(3):378–389. PMCID: PMC6601336
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Tanneti N, Federspiel J, Cristea I, Enquist L. The axonal sorting activity of pseudorabies virus Us9 protein depends on the state of neuronal maturation. PLoS Pathog. 2020;16(12):e1008861. PMCID: PMC7794026

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Schwoerer M, Ploss A. Barriers to hepatitis C virus infection in mice. Curr Opin Virol. 2022;56:101273. PMID: 36244239
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Ochoa A, Storey J, Llinás M, Singh M. Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. PLoS Comput Biol. 2015;11(11):e1004509. PMCID: PMC4648515
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Barrett T, Mok W, Brynildsen M. Biased inheritance protects older bacteria from harm. Science. 2017;356(6335):247–248. PMID: 28428383
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Maerker M, Getwan M, Dowdle M, McSheene J, Gonzalez V, Pelliccia J, Hamilton D, Yartseva V, Vejnar C, Tingler M, Minegishi K, Vick P, Giraldez A, Hamada H, Burdine R, Sheets M, Blum M, Schweickert A. Bicc1 and Dicer regulate left-right patterning through post-transcriptional control of the Nodal inhibitor Dand5. Nat Commun. 2021;12(1):5482. PMCID: PMC8446035
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Doherty C, Amargant F, Shvartsman S, Duncan F, Gavis E. Bidirectional communication in oogenesis: a dynamic conversation in mice and Drosophila. Trends Cell Biol. 2022;32(4):311–323. PMCID: PMC8917990