Graduate Publications

2022

• Wang R, Gallant É, Wilson MZ, Wu Y, Li A, Gitai Z, et al.. Algal p-coumaric acid induces oxidative stress and siderophore biosynthesis in the bacterial symbiont Phaeobacter inhibens. Cell Chem Biol. 2022 ;29(4):670-679.e5.

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• Doherty CA, Amargant F, Shvartsman SY, Duncan FE, Gavis ER. Bidirectional communication in oogenesis: a dynamic conversation in mice and Drosophila. Trends Cell Biol. 2022 ;32(4):311-323.

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• Zhang Y, Cortez JD, Hammer SK, Carrasco-López C, Echauri SÁGarcía, Wiggins JB, et al.. Biosensor for branched-chain amino acid metabolism in yeast and applications in isobutanol and isopentanol production. Nat Commun. 2022 ;13(1):270.

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• Fang C, Kang Y. Cellular plasticity in bone metastasis. Bone. 2022 ;158:115693.

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• Robbe ZL, Shi W, Wasson LK, Scialdone AP, Wilczewski CM, Sheng X, et al. CHD4 is recruited by GATA4 and NKX2-5 to repress noncardiac gene programs in the developing heart. Genes Dev. 2022 ;36(7-8):468-482.

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• Li X, Hui S, Mirek ET, Jonsson WO, Anthony TG, Lee WDong, et al. Circulating metabolite homeostasis achieved through mass action. Nat Metab. 2022 ;4(1):141-152.

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• Jack A, Kim Y, Strom AR, Lee DSW, Williams B, Schaub JM, et al. Compartmentalization of telomeres through DNA-scaffolded phase separation. Dev Cell. 2022 ;57(2):277-290.e9.

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• Li H, Gavis ER. The Drosophila fragile X mental retardation protein modulates the neuronal cytoskeleton to limit dendritic arborization. Development. 2022 ;149(10).

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• Peng Y, Gavis ER. The Drosophila hnRNP F/H homolog Glorund recruits dFMRP to inhibit nanos translation elongation. Nucleic Acids Res. 2022 ;.

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• Weaver CJ, Patel AL, Shvartsman SY, Levine MS, Treen N. ERK signaling dissolves ERF repression condensates in living embryos. Proc Natl Acad Sci U S A. 2022 ;119(9).

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• Nofal M, Wang T, Yang L, Jankowski CSR, Li SHsin-Jung, Han S, et al. GCN2 adapts protein synthesis to scavenging-dependent growth. Cell Syst. 2022 ;13(2):158-172.e9.

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• Tamura T, Zhang J, Madan V, Biswas A, Schwoerer MP, Cafiero TR, et al. Generation and characterization of genetically and antigenically diverse infectious clones of dengue virus serotypes 1-4. Emerg Microbes Infect. 2022 ;11(1):227-239.

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• Feigin C, Li S, Moreno J, Mallarino R. The GRN concept as a guide for evolutionary developmental biology. J Exp Zool B Mol Dev Evol. 2022 ;.

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• Zeng X, Xing X, Gupta M, Keber FC, Lopez JG, Lee Y-CJ, et al. Gut bacterial nutrient preferences quantified in vivo. Cell. 2022 ;185(18):3441-3456.e19.

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• Hill KE, Lovett BM, Schwarzbauer JE. Heparan sulfate is necessary for the early formation of nascent fibronectin and collagen I fibrils at matrix assembly sites. J Biol Chem. 2022 ;298(1):101479.

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• Kennedy MA, Greco TM, Song B, Cristea IM. HTT-OMNI: A Web-based Platform for Huntingtin Interaction Exploration and Multi-omics Data Integration. Mol Cell Proteomics. 2022 ;:100275.

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• Resnikoff HA, Miller CG, Schwarzbauer JE. Implications of fibrotic extracellular matrix in diabetic retinopathy. Exp Biol Med (Maywood). 2022 ;247(13):1093-1102.

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• Yang L, TeSlaa T, Ng S, Nofal M, Wang L, Lan T, et al. Ketogenic diet and chemotherapy combine to disrupt pancreatic cancer metabolism and growth. Med (N Y). 2022 ;3(2):119-136.

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• Pérez-Núñez I, Rozalén C, Palomeque JÁngel, Sangrador I, Dalmau M, Comerma L, et al.. LCOR mediates interferon-independent tumor immunogenicity and responsiveness to immune-checkpoint blockade in triple-negative breast cancer. Nat Cancer. 2022 ;3(3):355-370.

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• Eickhoff MJ, Fei C, Cong J-P, Bassler BL. LuxT Is a Global Regulator of Low-Cell-Density Behaviors, Including Type III Secretion, Siderophore Production, and Aerolysin Production, in Vibrio harveyi. mBio. 2022 ;:e0362121.

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• Overman KE, Choi DM, Leung K, Shaevitz JW, Berman GJ. Measuring the repertoire of age-related behavioral changes in Drosophila melanogaster. PLoS Comput Biol. 2022 ;18(2):e1009867.

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• Fei C, Wilson AT, Mangan NM, Wingreen NS, Jonikas MC. Modelling the pyrenoid-based CO-concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops. Nat Plants. 2022 ;8(5):583-595.

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• Howard TR, Lum KK, Kennedy MA, Cristea IM. The Nuclear DNA Sensor IFI16 Indiscriminately Binds to and Diminishes Accessibility of the HSV-1 Genome to Suppress Infection. mSystems. 2022 ;7(3):e0019822.

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• Singh AP, Wu P, Ryabichko S, Raimundo J, Swan M, Wieschaus E, et al. Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation. Cell Rep. 2022 ;38(12):110543.

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• Goodwin K, Jaslove JM, Tao H, Zhu M, Hopyan S, Nelson CM. Patterning the embryonic pulmonary mesenchyme. iScience. 2022 ;25(3):103838.

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