Graduate Publications

2021

• Dai W, Li A, Yu NJ, Nguyen T, Leach RW, Wühr M, et al.. Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation. Nat Chem Biol. 2021 ;17(11):1178-1187.

  • PubMed
  • BibTex
• Wang R, Gallant É, Wilson MZ, Wu Y, Li A, Gitai Z, et al.. Algal p-coumaric acid induces oxidative stress and siderophore biosynthesis in the bacterial symbiont Phaeobacter inhibens. Cell Chem Biol. 2021 ;.

  • PubMed
  • BibTex
• Liu Y, Maya S, Ploss A. Animal Models of Hepatitis B Virus Infection-Success, Challenges, and Future Directions. Viruses. 2021 ;13(5).

  • PubMed
  • BibTex
• Sheng X, Cristea IM. The antiviral sirtuin 3 bridges protein acetylation to mitochondrial integrity and metabolism during human cytomegalovirus infection. PLoS Pathog. 2021 ;17(4):e1009506.

  • PubMed
  • BibTex
• Maerker M, Getwan M, Dowdle ME, McSheene JC, Gonzalez V, Pelliccia JL, et al. Bicc1 and Dicer regulate left-right patterning through post-transcriptional control of the Nodal inhibitor Dand5. Nat Commun. 2021 ;12(1):5482.

  • PubMed
  • BibTex
• Sohrabi S, Moore RS, Murphy CT. CeAid: a smartphone application for logging and plotting Caenorhabditis elegans assays. G3 (Bethesda). 2021 ;11(10).

  • PubMed
  • BibTex
• Cao L, Beiser M, Koos JD, Orlova M, Elashal HE, Schröder HV, et al.. Cellulonodin-2 and Lihuanodin: Lasso Peptides with an Aspartimide Post-Translational Modification. J Am Chem Soc. 2021 ;143(30):11690-11702.

  • PubMed
  • BibTex
• Stahley SN, Basta LP, Sharan R, Devenport D. Celsr1 adhesive interactions mediate the asymmetric organization of planar polarity complexes. Elife. 2021 ;10.

  • PubMed
  • BibTex
• Doherty CA, Diegmiller R, Kapasiawala M, Gavis ER, Shvartsman SY. Coupled oscillators coordinate collective germline growth. Dev Cell. 2021 ;56(6):860-870.e8.

  • PubMed
  • BibTex
• Martin NR, Blackman E, Bratton BP, Chase KJ, Bartlett TM, Gitai Z. CrvA and CrvB form a curvature-inducing module sufficient to induce cell-shape complexity in Gram-negative bacteria. Nat Microbiol. 2021 ;6(7):910-920.

  • PubMed
  • BibTex
• Howard TR, Crow MS, Greco TM, Lum KK, Li T, Cristea IM. The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle. mSystems. 2021 ;6(3):e0039721.

  • PubMed
  • BibTex
• Wegner SA, Chen J-M, Ip SS, Zhang Y, Dugar D, Avalos JL. Engineering acetyl-CoA supply and ERG9 repression to enhance mevalonate production in Saccharomyces cerevisiae. J Ind Microbiol Biotechnol. 2021 ;.

  • PubMed
  • BibTex
• Chen PJ, Hussmann JA, Yan J, Knipping F, Ravisankar P, Chen P-F, et al. Enhanced prime editing systems by manipulating cellular determinants of editing outcomes. Cell. 2021 ;184(22):5635-5652.e29.

  • PubMed
  • BibTex
• Crapse J, Pappireddi N, Gupta M, Shvartsman SY, Wieschaus E, Wühr M. Evaluating the Arrhenius equation for developmental processes. Mol Syst Biol. 2021 ;17(8):e9895.

  • PubMed
  • BibTex
• Garrison CM, Schwarzbauer JE. Fibronectin fibril alignment is established upon initiation of extracellular matrix assembly. Mol Biol Cell. 2021 ;32(8):739-752.

  • PubMed
  • BibTex
• Nofal M, Wang T, Yang L, Jankowski CSR, Li SHsin-Jung, Han S, et al. GCN2 adapts protein synthesis to scavenging-dependent growth. Cell Syst. 2021 ;.

  • PubMed
  • BibTex
• Lum KK, Cristea IM. Host Innate Immune Response and Viral Immune Evasion During Alphaherpesvirus Infection. Curr Issues Mol Biol. 2021 ;42:635-686.

  • PubMed
  • BibTex
• Betsinger CN, Jankowski CSR, Hofstadter WA, Federspiel JD, Otter CJ, Beltran PMJean, et al. The human cytomegalovirus protein pUL13 targets mitochondrial cristae architecture to increase cellular respiration during infection. Proc Natl Acad Sci U S A. 2021 ;118(32).

  • PubMed
  • BibTex
• Lalwani MA, Zhao EM, Wegner SA, Avalos JL. The Inducible Q System Enables Simultaneous Optogenetic Amplification and Inversion in for Bidirectional Control of Gene Expression. ACS Synth Biol. 2021 ;10(8):2060-2075.

  • PubMed
  • BibTex
• Safari MS, King MR, Brangwynne CP, Petry S. Interaction of spindle assembly factor TPX2 with importins-α/β inhibits protein phase separation. J Biol Chem. 2021 ;297(3):100998.

  • PubMed
  • BibTex
• Chitrakar A, Solorio-Kirpichyan K, Prangley E, Rath S, Du J, Korennykh A. Introns encode dsRNAs undetected by RIG-I/MDA5/interferons and sensed via RNase L. Proc Natl Acad Sci U S A. 2021 ;118(46).

  • PubMed
  • BibTex
• Nimgaonkar I, Archer NF, Becher I, Shahrad M, LeDesma RA, Mateus A, et al. Isocotoin suppresses hepatitis E virus replication through inhibition of heat shock protein 90. Antiviral Res. 2021 ;185:104997.

  • PubMed
  • BibTex
• Murray-Nerger LA, Justice JL, Rekapalli P, Hutton JE, Cristea IM. Lamin B1 acetylation slows the G1 to S cell cycle transition through inhibition of DNA repair. Nucleic Acids Res. 2021 ;49(4):2044-2064.

  • PubMed
  • BibTex
• Murray-Nerger LA, Cristea IM. Lamin post-translational modifications: emerging toggles of nuclear organization and function. Trends Biochem Sci. 2021 ;46(10):832-847.

  • PubMed
  • BibTex
• Kichuk TC, Carrasco-López C, Avalos JL. Lights up on organelles: Optogenetic tools to control subcellular structure and organization. WIREs Mech Dis. 2021 ;13(1):e1500.

  • PubMed
  • BibTex