Graduate Studies

Graduate Publications


Abbott C, Tiede B, Armah G, Mahmoud A. (2012). "Evaluation of cost-effectiveness of live oral pentavalent reassortant rotavirus vaccine introduction in Ghana." Vaccine 30(15): 2582-2587. PMID: 22321664 [PubMed - indexed for MEDLINE]

Blanco MA, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y. (2012). "Global secretome analysis identifies novel mediators of bone metastasis." Cell Res 22(9): 1339-1355. PMCID: 3434351

Bos J, Yakhnina AA, Gitai Z. (2012). "BapE DNA endonuclease induces an apoptotic-like response to DNA damage in Caulobacter." Proc Natl Acad Sci U S A 109(44): 18096-18101. PMCID: 3497781

Chahal, J. S. and S. J. Flint (2012). "Timely synthesis of the adenovirus type 5 E1B 55-kilodalton protein is required for efficient genome replication in normal human cells." J Virol 86(6): 3064-3072. PMCID: 3302336

Chahal JS, Qi J, Flint SJ (2012). "The human adenovirus type 5 E1B 55 kDa protein obstructs inhibition of viral replication by type I interferon in normal human cells." PLoS Pathog 8(8): e1002853. PMCID: 3415460

Chakrabarti R, Hwang J, Andres Blanco M, Wei Y, Lukačišin M, Romano RA, Smalley K, Liu S, Yang Q, Ibrahim T, Mercatali L, Amadori D, Haffty BG, Sinha S, Kang Y. (2012). "Elf5 inhibits the epithelial-mesenchymal transition in mammary gland development and breast cancer metastasis by transcriptionally repressing Snail2." Nat Cell Biol 14(11): 1212-1222 PMCID: 3500637

Chakrabarti R, Wei Y, Romano RA, DeCoste C, Kang Y, Sinha S. (2012). "Elf5 regulates mammary gland stem/progenitor cell fate by influencing notch signaling." Stem Cells 30(7): 1496-1508. PMID: 22523003 [PubMed - indexed for MEDLINE]

Cooper RM, Wingreen NS, Cox EC. (2012). "An excitable cortex and memory model successfully predicts new pseudopod dynamics." PLoS One 7(3):PMCID: 3310873

Ell, B. and Y. Kang (2012). "SnapShot: Bone Metastasis." Cell 151(3): 690-690 e691. PMID: 23101634 [PubMed - indexed for MEDLINE]

Fang W, Wang X, Bracht JR, Nowacki M, Landweber LF. (2012). "Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement." Cell 151(6): 1243-1255. PMID: 23217708 [PubMed - indexed for MEDLINE]

Fang W, Wei Y, Kang Y, Landweber LF. (2012). "Detection of a common chimeric transcript between human chromosomes 7 and 16." Biol Direct 7: 49. PMCID: 3538553

Fuesler JA, Li HJ. (2012). "Dynamic instability--a common denominator in prokaryotic and eukaryotic DNA segregation and cell division." Cell Mol Biol Lett 17(4): 542-548. PMID: 22893264 [PubMed - indexed for MEDLINE]

Grady SL, Hwang J, Vastag L, Rabinowitz JD, Shenk T. (2012). "Herpes simplex virus 1 infection activates poly(ADP-ribose) polymerase and triggers the degradation of poly(ADP-ribose) glycohydrolase." J Virol 86(15): 8259-8268. PMCID: 3421676

Greco TM, Miteva Y, Conlon FL, Cristea IM. (2012) "Complementary proteomic analysis of protein complexes." Methods Mol Biol 917: 391-407. PMID: 22956100 [PubMed - indexed for MEDLINE]

Guise AJ, Greco TM, Zhang IY, Yu F, Cristea IM. (2012). "Aurora B-dependent regulation of class IIa histone deacetylases by mitotic nuclear localization signal phosphorylation." Mol Cell Proteomics 11(11): 1220-1229. PMCID: 3494195

Han Y, Whitney G, Donovan J, Korennykh A. (2012). "Innate immune messenger 2-5A tethers human RNase L into active high-order complexes." Cell Rep 2(4): 902-913. PMID: 23084743 [PubMed - in process]

Kato SE, Chahal JS, Flint SJ. (2012). "Reduced infectivity of adenovirus type 5 particles and degradation of entering viral genomes associated with incomplete processing of the preterminal protein." J Virol 86(24): 13554-13565. PMCID: 3503036

Koh, B. I. and Y. Kang (2012). "The pro-metastatic role of bone marrow-derived cells: a focus on MSCs and regulatory T cells." EMBO Rep 13(5): 412-422. PMC3343352

Kramer, T. and L. W. Enquist (2012). "Alphaherpesvirus infection disrupts mitochondrial transport in neurons." Cell Host Microbe 11(5): 504-514. PMCID: 3358700

Kramer T, Greco TM, Taylor MP, Ambrosini AE, Cristea IM, Enquist LW. (2012). "Kinesin-3 mediates axonal sorting and directional transport of alphaherpesvirus particles in neurons." Cell Host Microbe 12(6): 806-814. PMCID: 3527838

Taylor, M. P., Kramer T. Lyman, M. G. Kratchmarov, R. Enquist, L. W. (2012). "Visualization of an alphaherpesvirus membrane protein that is essential for anterograde axonal spread of infection in neurons." MBio 3(2). PMCID 3315705

Nguyen TD, Deshmukh N, Nagarah JM, Kramer T, Purohit PK, Berry MJ, McAlpine MC. (2012) “Piezoelectric nanoribbons for monitoring cellular deformations.” Nat Nanotechnol. Sep;7(9):587-93. PMID: 22796742 [PubMed - in process]

Legesse-Miller A, Raitman I, Haley EM, Liao A, Sun LL, Wang DJ, Krishnan N, Lemons JM, Suh EJ, Johnson EL, Lund BA, Coller HA. (2012). "Quiescent fibroblasts are protected from proteasome inhibition-mediated toxicity." Mol Biol Cell 23(18): 3566-3581. PMCID: 3442405

Valcourt, J. R., Lemons, J. M., Haley, E. M., Kojima, M., Demuren, O. O. ,Coller, H. A. (2012). "Staying alive: Metabolic adaptations to quiescence." Cell Cycle 11(9). PMCID: 3372394

Leroy G, Chepelev I, Dimaggio PA, Blanco MA, Zee BM, Zhao K, Garcia BA. (2012). "Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins." Genome Biol 13(8): R68. PMCID: 3491368

Li T, Diner BA, Chen J, Cristea IM. (2012). "Acetylation modulates cellular distribution and DNA sensing ability of interferon-inducible protein IFI16." Proc Natl Acad Sci U S A 109(26): 10558-10563.

Martynovsky M, Wong MC, Byrd DT, Kimble J, Schwarzbauer JE. (2012). "mig-38, a novel gene that regulates distal tip cell turning during gonadogenesis in C. elegans hermaphrodites." Dev Biol 368(2): 404-414. PMID: 22732572 [PubMed - indexed for MEDLINE]

McMahon C, Studer SM, Clendinen C, Dann GP, Jeffrey PD, Hughson FM. (2012). "The structure of Sec12 implicates potassium ion coordination in Sar1 activation." J Biol Chem 287(52): 43599-43606. PMCID: 3527946

Ricci DP, Hagan CL, Kahne D, Silhavy TJ. (2012). "Activation of the Escherichia coli beta-barrel assembly machine (Bam) is required for essential components to interact properly with substrate." Proc Natl Acad Sci U S A 109(9): 3487-3491.

Richard Sun X, Giovannucci A, Sgro AE, Wang SS. (2012). "SnapShot: Optical control and imaging of brain activity." Cell wei(7): 1650-1650 e1652. PMCID: 3295296

Rigel NW, Schwalm J, Ricci DP, Silhavy TJ. (2012). "BamE modulates the Escherichia coli beta-barrel assembly machine component BamA." J Bacteriol 194(5): 1002-1008. PMCID: 3294770

Sabouri N, McDonald KR, Webb CJ, Cristea IM, Zakian VA. (2012). "DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase." Genes Dev 26(6): 581-593. PMCID: 3315119

Shao, Y. and B. L. Bassler (2012). "Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets." Mol Microbiol 83(3): 599-611. PMCID: 3262071

Stein, G. M. and C. T. Murphy (2012). "The Intersection of Aging, Longevity Pathways, and Learning and Memory in C. elegans." Front Genet 3: 259. PMCID: 3509946

Taylor MP, Kramer T, Lyman MG, Kratchmarov R, Enquist LW. (2012). "Visualization of an alphaherpesvirus membrane protein that is essential for anterograde axonal spread of infection in neurons." MBio 3(2). PMCID: 3315705

Tsai YC, Greco TM, Boonmee A, Miteva Y, Cristea IM. (2012). "Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription." Mol Cell Proteomics 11(5):60-76. PMCID: 3418843

Wang DJ, Legesse-Miller A, Johnson EL, Coller HA (2012). "Regulation of the let-7a-3 promoter by NF-kappaB." PLoS One 7(2): e31240. PMCID: 3278432

Wang S, Furchtgott L, Huang KC, Shaevitz JW.., L. Furchtgott, et al. (2012). "Helical insertion of peptidoglycan produces chiral ordering of the bacterial cell wall." Proc Natl Acad Sci U S A 109(10): E595-604. PMCID: 3309786

Wei Y, Ng WL, Cong J, Bassler BL. (2012). "Ligand and antagonist driven regulation of the Vibrio cholerae quorum-sensing receptor CqsS." Mol Microbiol 83(6): 1095-1108. PMCID: 3310172

Yakhnina A. A. and Gitai Z. (2012). "The small protein MbiA interacts with MreB and modulates cell shape in Caulobacter crescentus." Mol Microbiol 85(6): 1090-1104. PMID: 22804814 [PubMed - indexed for MEDLINE]

Zee BM, Britton LM, Wolle D, Haberman DM, Garcia BA. (2012). "Origins and formation of histone methylation across the human cell cycle." Mol Cell Biol 32(13): 2503-2514. PMCID: 3434498

Zee, B. M. and B. A. Garcia (2012). "Discovery of lysine post-translational modifications through mass spectrometric detection." Essays Biochem 52: 147-163. PMID: 22708569 [PubMed - indexed for MEDLINE]

Reaves ML, Sinha S, Rabinowitz JD, Kruglyak L, Redfield RJ.(2012) “Absence of detectable arsenate in DNA from arsenate-grown GFAJ-1 cells.” Science. Jul 27;337 (6093):470-3. PMID: 22773140 [PubMed - indexed for MEDLINE]

Xu YF, Zhao X, Glass DS, Absalan F, Perlman DH, Broach JR, Rabinowitz JD.(2012) “Regulation of yeast pyruvate kinase by ultrasensitive allostery independent of phosphorylation.” Mol Cell. Oct 12;48(1):52-62. PMCID: 3472130

Andersen EC, Gerke JP, Shapiro JA, Crissman JR, Ghosh R, Bloom JS, Félix MA, Kruglyak L. (2012) “Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity.” Nat Genet. Jan 29;44(3):285-90. PMCID: 3365839

Khan Z, Bloom JS, Amini S, Singh M, Perlman DH, Caudy AA, Kruglyak L. (2012) “Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.” Mol Syst Biol.;8:602. PMCID: 3435501

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